Few options you can use to reach Kiyomizu Temple from Kyoto Station. Both routes required some walking to get to Kiyomizu Temple. You will be happy once you get to there.
Route 1 approx. 25 min. for a total fee of 270 Yen.
1. Take a train from Kyoto to Tofukuji on the JR Nara line. (approx. 2 min.)
2. Take a train from Tofukuji to Kiyomizu-gojo on Keihan Railway. (approx. 3 min.)
3. Walk from Keihan Kiyomizu-gojo station. (approx. 20 min.)
Route 2 approx. 25 min. for a total fee of 230 Yen.
1. Take Kyoto city bus #100 or #206 from Kyoto Sta. to Gojozaka (approx. 15 min.)
2. Walk from the Gojozaka bus stop (approx. 10 min.)